WebNov 10, 2016 · GitHub - genome/docker-vep: Docker containerization for Ensembl Variant Effect Predictor genome / docker-vep Notifications Fork Star master 4 branches 0 tags Code 1 commit Failed to load latest commit information. README.md README.md docker-vep Docker containerization for Ensembl Variant Effect Predictor Webgit Python 3 yaml csv snakemake >=5.4 tcsh gawk wget After prepare neoantigen predicton softwares, download necessary data libraries. This package installs only the variant effect predictor (VEP) library code. To install data libraries, you can use the 'vep_install' command installed along with it.
Ensembl Tools
Webensembl-vep Link to section 'Ensembl-vep' of 'ensembl-vep' Ensembl-vep Link to section 'Introduction' of 'ensembl-vep' Introduction Ensembl-vep(Ensembl Variant Effect Predictor) predicts the functional effects of genomic variants. WebHi Nitseh, thanks for the suggestions. My goal is to use the ensemblVEP package inside of a docker container. I don't care how the container was built or what install system I use. … by light unseen media
The Ensembl Variant Effect Predictor - PubMed
WebFollow their code on GitHub. Ensembl Project has 191 repositories available. Follow their code on GitHub. ... The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants ... Plugins for the Ensembl … WebGo to any Ensembl Fungi page and click on Tools in the navigation bar at the top of the page. Click on Variant Effect Predictor and change your species to Verticillium dahliae … WebApr 16, 2024 · The VEP outcome has a column "IMPACT", which is described as "Subjective impact classification of consequence type" on this page, while in the paper "The Ensembl Variant Effect Predictor", it might be inferred that it is adopted and processed using data from GENCODE and RefSeq but without any further details.. I think this … by light mclean va